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Added new module oarfish - #12638

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khersameesh24 merged 4 commits into
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add-module-oarfish
Aug 10, 2026
Merged

Added new module oarfish#12638
khersameesh24 merged 4 commits into
masterfrom
add-module-oarfish

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@khersameesh24

@khersameesh24 khersameesh24 commented Aug 8, 2026

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Added new module - oarfish

Closes #12639

  • [✓] This comment contains a description of changes (with reason).
  • [✓] If you've fixed a bug or added code that should be tested, add tests!
  • [✓] If you've added a new tool - have you followed the module conventions in the contribution docs
  • [✓] If necessary, include test data in your PR.
  • [✓] Remove all TODO statements.
  • [✓] Broadcast software version numbers to topic: versions - See version_topics
  • [✓] Follow the naming conventions.
  • [✓] Follow the parameters requirements.
  • [✓] Follow the input/output options guidelines.
  • [✓] Add a resource label
  • [✓] Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • [✓] nf-core modules test <MODULE> --profile docker
      • [✓] nf-core modules test <MODULE> --profile singularity
      • [✓] nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • nf-core subworkflows test <SUBWORKFLOW> --profile conda

Comment thread modules/nf-core/oarfish/alignmentmode/main.nf Outdated
Comment thread modules/nf-core/oarfish/alignmentmode/tests/main.nf.test.snap
Comment thread modules/nf-core/oarfish/alignmentmode/meta.yml
Comment thread modules/nf-core/oarfish/alignmentprojectionmode/main.nf Outdated
Comment thread modules/nf-core/oarfish/readmode/main.nf Outdated
Comment thread modules/nf-core/oarfish/alignmentprojectionmode/meta.yml
Comment thread modules/nf-core/oarfish/readprojectionmode/main.nf
Comment thread modules/nf-core/oarfish/readprojectionmode/main.nf Outdated
Comment thread modules/nf-core/oarfish/alignmentmode/tests/main.nf.test
Comment thread modules/nf-core/oarfish/readmode/main.nf
@khersameesh24

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@kubranarci , I addressed the requested changes; this PR can be merged

@khersameesh24
khersameesh24 added this pull request to the merge queue Aug 10, 2026
Merged via the queue into master with commit 3e5bd51 Aug 10, 2026
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@khersameesh24
khersameesh24 deleted the add-module-oarfish branch August 10, 2026 09:56
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new module: oarfish

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